Well, I spoke too soon.

The roof is still leaking, and now my windows will not close as the car is kicking in the "pinch protection" when there is nothing to pinch. I believe that is sign #1 of electrical problems.

I called my dealer and have an appointment next week.

I've also noticed that the car interior is making all sorts of creaking noises -- I don't know if there is any correlation.

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2008 535xi 6-speed - Blk Sapphire, ---2011 535xi - Jet Blk, Blk Dakota,
Blk Dakota, Bamboo Prem | Cold Wthr -- Aluminum | Prem | Prem 2 | Cold Wthr
Sport | iPod/USB | Nav | Sat --- -------Sport | Sport Auto | Fold Down Seats
Fold Down Seats | Htd Rear Seats -- ---Side/Top Cameras
PDC | 18" wheels | Logic7
(Good riddance!)