got to the stoptech.com site and read all about brakes in their white papers. you'll be a genius and won't ask about warped rotors again.
^^Definitely do this. Warped rotors are indeed uncommon, but still possible.
I started a thread here not that long ago about the same kind of problem. I had a sticking caliper that I didn't change right away when I changed my pads & rotors over a year ago now. I tried everything including bedding the brakes numerous times but until I changed the rotor, the problem would recur.
Try bedding the brakes a few times, and the wheel shake might go away. In my case it would actually get better after brake bedding but would not go away completely... then it would slowly return. New rotors = problem solved, in my case. But as others have mentioned, there are plenty of things to think about before throwing new rotors at it.